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By Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao (auth.), Ben Raphael, Jijun Tang (eds.)

This publication constitutes the refereed lawsuits of the twelfth foreign Workshop on Algorithms in Bioinformatics, WABI 2012, held in Ljubljana, Slovenia, in September 2012. WABI 2012 is one in all six workshops which, besides the eu Symposium on Algorithms (ESA), represent the ALGO annual assembly and makes a speciality of algorithmic advances in bioinformatics, computational biology, and platforms biology with a selected emphasis on discrete algorithms and machine-learning tools that tackle vital difficulties in molecular biology. The 35 complete papers offered have been rigorously reviewed and chosen from ninety two submissions. The papers contain algorithms for quite a few organic difficulties together with phylogeny, DNA and RNA sequencing and research, protein constitution, and others.

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Additional info for Algorithms in Bioinformatics: 12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings

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Cenozoic imprints on the phylogenetic structure of palm species assemblages worldwide. Proc. National Academy of Sciences 109, 7379–7384 (2012) 10. R Development Core Team. R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna (2010) 11. : Tools to construct and study big trees: A mathematical perspective. , Waldren, S. ) Reconstructing the Tree of Life: Taxonomy and Systematics of Species Rich Taxa, pp. 97–112. CRC Press (2007) 12. : Phylogenies and community ecology.

Trans. Amer. Math. Soc. 356, 2379– 2404 (2004) 18. : FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Mol. Biol. E 26(7), 1641–1650 (2009) 19. : Analyzing the fitch method for reconstructing ancestral states on ultrametric phylogenetic trees. Bulletin of Mathematical Biology 72, 1760–1782 (2010) Efficient Computation of Popular Phylogenetic Tree Measures Constantinos Tsirogiannis1, Brody Sandel1 , and Dimitris Cheliotis3 1 MADALGO and Department of Bioscience Aarhus University, Denmark 2 Department of Mathematics University of Athens, Greece Abstract.

ICALP 2005. LNCS, vol. 3580, pp. 1263–1274. Springer, Heidelberg (2005) 8. : A few logs suffice to build (almost) all trees: Part II. Theor. Comput. Sci 221(1-2), 77–118 (1999) 9. : Greengenes, a chimera-checked 16s rrna gene database and workbench compatible with arb. Appl. Environ. Microbiol. 72, 5069–5072 (2006) 10. : Broadcasting on trees and the Ising model. The Annals of Applied Probability 10(2), 410–433 (2000) 11. : Inferring Phylogenies. Sinauer (2001) 12. : Fast and reliable reconstruction of phylogenetic trees with very short edges.

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